journals

2026

GPC: An expressive and tractable deep generative model for genetic variation data

Prateek Anand, Anji Liu, Meihua Dang, Boyang Fu, Xinzhu Wei, Guy Van den Broeck*, and Sriram Sankararaman*

PLOS Genetics, Oct 2026
The Label is Not the Disease: Recognition Delay in Diagnosis Codes and Its Cost to EHR Case Finding

Moonseong Jeong, Prateek Anand, Simon A. Lee, Sungjoo Han, Zhengtong Liu, and Sriram Sankararaman

Machine Learning for Health (ML4H) — Proceedings Track, 2026
Metapipeline-DNA: A comprehensive germline and somatic genomics Nextflow pipeline

Yash Patel*, Chenghao Zhu*, Takafumi N. Yamaguchi*, ..., Prateek Anand, ..., and Paul C. Boutros

Cell Reports Methods, Mar 2026

A biobank-scale test of marginal epistasis reveals genome-wide signals of polygenic interaction effects

Boyang Fu*, Ali Pazokitoroudi*, Zhuozheng Shi, Asha Kar, Albert Xue, Aakarsh Anand, Prateek Anand, Zhengtong Liu, Richard Border, Paivi Pajukanta, Noah Zaitlen, and Sriram Sankararaman

Nature Genetics, 2025

A scalable adaptive quadratic kernel method for interpretable epistasis analysis in complex traits

Boyang Fu*, Prateek Anand*, Aakarsh Anand*, Joel Mefford, and Sriram Sankararaman

Genome Research, 2024

GPC: Deep generative model of genetic variation data improves imputation accuracy in private populations

Prateek Anand, Anji Liu, Meihua Dang, Boyang Fu, Xinzhu Wei, Guy Van den Broeck*, and Sriram Sankararaman*

ICLR Gen² Workshop — Oral Spotlight (Top 10%), 2026

OpenReview Poster Slides
Genome-wide LD scores enable robust heritability and genetic correlation estimation from summary statistics across genetic ancestries

Moonseong Jeong, Zhengtong Liu, Jiayi Ni, Ulzee An, Sungjoo Han, Aakarsh Anand, Prateek Anand, Mayuko Boffelli, and Sriram Sankararaman

bioRxiv, 2026

Comprehensive gene heritability estimation reveals the genetic architecture of rare coding variants underlying complex traits

Zhengtong Liu, Boyang Fu, Moonseong Jeong, Prateek Anand, Aakarsh Anand, Seon-Kyeong Jang, Aditya Gorla, Jiazheng Zhu, Paivi Pajukanta, Pier Francesco Palamara, Noah Zaitlen, Richard Border, and Sriram Sankararaman

bioRxiv, 2025